Functional annotation tools; David provides a comprehensive set of functional annotation tools to help understand the biological meaning behind large gene lists. Gene id conversion tool; · with the comprehensive identifier mapping system in david, many given gene/protein identifiers can be quickly mapped to another based on the users choice. David gene id is non-redundant gene cluster id which holds many different types of gene identifiers for one single gene entry. · in addition, to take full advantage of the well-known kegg and biocarta pathways, the david pathway viewer, another feature of the david functional annotation tool, can display genes from a users list on pathway maps to facilitate biological interpretation in a network context. Gene name batch viewer. Gene functional classification tool; David provides an integrated knowledgebase collected from the most common bioinformatic resources (see update of knowledgebase for details). David gene ids are used as the unique index ids to link all types of gene identifiers and corresponding annotations throughout david knowledgebase. To leverage the knowledgebase, four sets of comprehensive tools have been developed including: The david knowledgebase, a backend database used for all david bioinformatics tools, is built around the david gene concept, a single- linkage method to agglomerate tens of million of gene/protein identifiers and associated annotation from dozens of well-known bio-databases. The tool also automatically suggests possible choices for the ambiguous gene/protein identifiers in the list. Powered by the david knowledgebase, it integrates multiple sources of functional annotations. · gene/protein lists are managed by the centralized list manager panel of david and user-submitted lists are stored in this panel which can be accessed by all david tools.
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Functional annotation tools; David provides a comprehensive set of functional annotation tools to help understand the biological meaning behind large gene lists. Gene id conversion...